Transforming XML file: NeuroMLFiles/Examples/ChannelML/CellWithChannels.xml using XSL file: NeuroMLFiles/Schemata/v1.8.1/Level3/NeuroML_Level3_v1.8.1_HTML.xsl

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Converting the file: CellWithChannels.xml

NeuroML Level 3 file

General notesThis example shows a Level 2 compliant file, containing morphology and channel information. Note that the specification of the channel mechanism would normally be in separate files.

Cell: CellWithChannels

NameCellWithChannels
Description
As described in the NeuroML file
Test cell for showing how channels can be placed on a cell
Total number of segments6
Total number of cables3 with 1 soma cable(s), 2 dendritic cable(s) and 0 axonal cable(s)
Cable details SomaSec (id:0), number of segments in cable: 1
  This cable is present in groups: all  soma_group  

DendSec1 (id:1), fraction along parent cable: 0.5, number of segments in cable: 3
  This cable is present in groups: all  dendrite_group  

DendSec2 (id:2), number of segments in cable: 2
  This cable is present in groups: all  dendrite_group  

Biophysical properties of cell: CellWithChannels

Unit system of biophysical entities
This can be either SI Units or Physiological Units
Physiological Units
Channel Mechanism: pas
An active membrane conductance

Conductance density (gmax) of 0.0330033 mS cm-2 on: all 

Specific Capacitance
This is the capacitance per unit area of the membrane

Specific Capacitance of 1.0 uf/cm2 on: all some 

Specific Axial Resistance
This is the specific cytoplasmic resistance along a dendrite/axon

Specific Axial Resistance of 0.1 Kohm cm on: all 

Initial Membrane Potential
This quantity is often required for computational simulations and specifies the potential difference across the membrane at the start of the simulation.

Initial Membrane Potential -70 mV on: all 


Channel: pas

Namepas
Description
As described in the ChannelML file
Simple example of a leak/passive conductance.






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