Relevant Publications
Günay, C. et al. (2008) Computational intelligence in electrophysiology: Trends and open problems. In Smolinski, Milanova and Hassanien, eds. Applications of Computational Intelligence in Biology. Springer, Berlin/Heidelberg.
Gleeson, P., V. Steuber, and R. A. Silver (2007) neuroConstruct: A Tool for Modeling Networks of Neurons in 3D Space. Neuron. 54(2):219-235.
Cannon R. C., M. O. Gewaltig, P. Gleeson, U. S. Bhalla, H. Cornelis, M. L. Hines, F. W. Howell, E. Muller, J. R. Stiles, S. Wils, E. De Schutter (2007) Interoperability of Neuroscience Modeling Software: Current Status and Future Directions. Neuroinformatics Volume 5, 127-138.
Crook, S., P. Gleeson, F. Howell, J. Svitak and R.A. Silver (2007) MorphML: Level 1 of the NeuroML standards for neuronal morphology data and model specification. Neuroinformatics. 5(2):96-104.
Brette, R. et al. (2007) Simulations of networks of spiking neurons: A review of tools and strategies. Journal of Computational Neuroscience. 23:349-398.
Crook, S. and F. Howell (2007) XML for data representation and model specification in neuroscience. In Methods in Molecular Biology Book Series: Neuroinformatics. ed. C. Crasto, Humana Press.
Crook, S., D. Beeman, P. Gleeson and F. Howell (2005) XML for model specification in neuroscience: An introduction and workshop summary. Brains, Minds, and Media. 1:bmm228 (urn:nbn:de:0009-3-2282).
Qi, W. and S. Crook (2004) Tools for neuroinformatic data exchange: An XML application for neuronal morphology data. Neurocomputing. 58-60C:1091-1095.
Goddard, N., M. Hucka, F. Howell, H. Cornelis, K. Shankar and D. Beeman (2001) Towards NeuroML: Model description methods for collaborative modeling in neuroscience. Philosophical Transactions of the Royal Society B. 356:1209-1228.
Abstracts
Gleeson, P., S. Crook, S. Barnes and R.A. Silver (2008) Interoperable model components for biologically realistic single neuron and network models implemented in NeuroML. Frontiers in Neuroinformatics. Conference Abstract: Neuroinformatics 2008. doi: 10.3389/conf.neuro.11.2008.01.135.
Larson, S. and M. Martone (2008) A spatial framework for multi-scale computational neuroanatomy. Frontiers in Neuroinformatics. Conference Abstract: Neuroinformatics 2008. doi: 10.3389/conf.neuro.11.2008.01.134.
Crook, S., P. Gleeson and R.A. Silver (2007) NetworkML: Level 3 of the NeuroML standards for multiscale model specification and exchange. Society for Neuroscience Abstracts. 102.28.
Gleeson, P., S. Crook, V. Steuber and R.A. Silver (2007) Using NeuroML and neuroConstruct to build neuronal network models for multiple simulators. BMC Neuroscience. 8(2):P101.